Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs12897774 chr14:74521144 C/T 0.000221 175 25.4 27.43 10.43 KM Plot
PCPG rs12898548 chr15:30949394 G/A 0 177 25.87 23.43 3.17 KM Plot
PCPG rs12900294 chr15:30935958 T/C 0 176 25.87 21.9 3.17 KM Plot
PCPG rs12904833 chr15:31090995 C/T 1.11E-16 174 25.92 23.83 2.12 KM Plot
PCPG rs12904872 chr15:31029256 A/G 1.11E-16 174 25.92 23.83 2.12 KM Plot
PCPG rs12906190 chr15:30967896 C/T 0 174 25.92 23.83 2.12 KM Plot
PCPG rs12908349 chr15:43086227 C/T 3.35E-14 175 25.47 24.85 3.17 KM Plot
PCPG rs12910799 chr15:43274864 G/T 2.98E-14 175 25.87 24.03 3.17 KM Plot
PCPG rs12911334 chr15:43305253 G/A 2.58E-14 176 25.87 24.03 3.17 KM Plot
PCPG rs12913618 chr15:43071329 C/T 2.96E-13 175 25.47 24.62 25.17 KM Plot
PCPG rs12914380 chr15:43242268 C/T 2.96E-14 174 25.87 24.7 3.17 KM Plot
PCPG rs12915116 chr15:43074680 C/T 1.34E-13 178 25.87 24.62 25.17 KM Plot
PCPG rs12916896 chr15:30954023 C/G 0 177 25.87 23.43 3.17 KM Plot
PCPG rs12919417 chr16:71579711 A/G 0.000121 178 15.82 25.27 25.28 KM Plot
PCPG rs12919804 chr16:89945369 G/A 0.000157 176 25.77 21.5 36.37 KM Plot